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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
68
DNase-seq
9
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
1
FAIRE-seq
1
WGBS
Assay category
154
DNA binding
73
DNA accessibility
16
Transcription
3
3D chromatin structure
1
DNA methylation
Target of assay
154
histone
154
histone modification
97
narrow histone mark
57
broad histone mark
3
control
Date released
128
October, 2019
November, 2017
62
June, 2019
31
May, 2019
17
July, 2019
7
October, 2017
2
November, 2018
Available data
279
bam
247
bigWig
231
bed narrowPeak
148
bigBed narrowPeak
71
bed bed3+
71
bed broadPeak
68
bigBed broadPeak
52
tagAlign
33
tsv
12
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
247
Homo sapiens
Biosample type
236
tissue
11
primary cell
Organ
623
pancreas
570
connective tissue
425
adipose tissue
354
liver
295
epithelium
184
heart
156
brain
149
vasculature
147
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
247
AMP
Genome assembly (visualization)
242
GRCh38
234
hg19
Lab
247
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
month_released!
November, 2017
BIOSAMPLE
ASSAY
247 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
FAIRE-seq
WGBS
tissue
tibial nerve
24
2
4
1
brain
11
14
1
tibial artery
18
2
1
muscle of leg
6
13
1
muscle of arm
17
+ See 75 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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