Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ChIP-seq
64
DNase-seq
9
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
Hi-C
1
FAIRE-seq
1
WGBS
Assay category
196
DNA binding
68
DNA accessibility
16
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
194
histone
194
histone modification
114
narrow histone mark
80
broad histone mark
4
control
1
RNA binding protein
1
transcription factor
Date released
107
October, 2019
60
June, 2019
60
November, 2017
31
May, 2019
16
July, 2019
7
October, 2017
2
November, 2018
Available data
323
bam
283
bigWig
268
bed narrowPeak
185
bigBed narrowPeak
118
tagAlign
75
bed broadPeak
66
bed bed3+
66
bigBed broadPeak
32
tsv
15
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
283
Homo sapiens
Biosample type
272
tissue
11
primary cell
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
301
epithelium
222
brain
184
heart
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
283
AMP
Genome assembly (visualization)
277
GRCh38
219
hg19
Lab
283
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
organ_slims!
vasculature
BIOSAMPLE
ASSAY
283 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
FAIRE-seq
WGBS
tissue
tibial nerve
24
2
4
1
brain
11
14
1
muscle of leg
6
13
1
layer of hippocampus
17
muscle of arm
17
+ See 76 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
See all biosamples
Download