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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
274
ChIP-seq
68
DNase-seq
9
total RNA-seq
5
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
1
FAIRE-seq
1
WGBS
Assay category
274
DNA binding
74
DNA accessibility
16
Transcription
3
3D chromatin structure
1
DNA methylation
Target of assay
215
histone
215
histone modification
121
narrow histone mark
94
broad histone mark
54
transcription factor
13
RNA binding protein
10
chromatin remodeller
6
control
Date released
128
October, 2019
66
November, 2017
62
June, 2019
31
May, 2019
27
December, 2018
17
July, 2019
15
January, 2019
14
November, 2018
7
October, 2017
1
January, 2018
Available data
417
bam
368
bigWig
349
bed narrowPeak
265
bigBed narrowPeak
118
tagAlign
83
bed broadPeak
81
fastq
74
bigBed broadPeak
71
bed bed3+
33
tsv
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
368
Homo sapiens
Biosample type
293
tissue
55
cell line
20
primary cell
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
301
epithelium
222
brain
184
heart
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
368
AMP
Genome assembly (visualization)
358
GRCh38
304
hg19
Lab
368
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
inconsistent control
Audit category:
3
missing controlled_by
BIOSAMPLE
ASSAY
368 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
FAIRE-seq
WGBS
tissue
tibial nerve
24
2
4
1
brain
11
14
1
tibial artery
18
2
1
muscle of leg
6
13
1
layer of hippocampus
17
+ See 77 more…
cell line
GM12878
54
1
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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