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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
36
DNase-seq
18
total RNA-seq
2
ATAC-seq
1
GRO-seq
1
WGBS
Assay category
62
DNA binding
38
DNA accessibility
18
Transcription
1
DNA methylation
Target of assay
59
histone
59
histone modification
38
broad histone mark
21
narrow histone mark
3
transcription factor
Date released
52
October, 2019
32
June, 2019
10
February, 2018
8
August, 2021
8
December, 2017
6
May, 2019
2
May, 2021
1
January, 2018
1
July, 2019
Available data
150
bam
120
bigWig
106
bed narrowPeak
84
bigBed narrowPeak
39
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
27
fastq
21
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
120
Homo sapiens
Biosample type
91
tissue
21
in vitro differentiated cells
8
cell line
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
301
epithelium
224
heart
222
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
120
AMP
Genome assembly (visualization)
118
GRCh38
118
hg19
1
hg18
Lab
120
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
3
inconsistent control read length
BIOSAMPLE
ASSAY
120 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
GRO-seq
WGBS
tissue
tibial nerve
24
2
4
1
tibial artery
18
2
1
muscle of leg
6
13
1
muscle of arm
17
forelimb muscle
1
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in vitro differentiated cells
pancreatic endoderm
12
4
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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