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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
total RNA-seq
49
ChIP-seq
20
ATAC-seq
3
small RNA-seq
2
DNase-seq
1
Hi-C
Assay category
157
Transcription
49
DNA binding
22
DNA accessibility
1
3D chromatin structure
Target of assay
38
histone
38
histone modification
33
narrow histone mark
11
transcription factor
5
broad histone mark
1
RNA binding protein
Date released
170
May, 2020
20
May, 2022
17
August, 2021
8
July, 2019
6
October, 2019
5
December, 2019
2
June, 2019
1
March, 2020
Available data
681
bam
622
bigWig
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
229
Homo sapiens
Biosample type
204
tissue
14
cell line
11
primary cell
Organ
496
connective tissue
402
adipose tissue
266
pancreas
229
liver
204
brain
184
heart
149
vasculature
147
blood vessel
131
kidney
118
epithelium
91
limb
85
artery
68
musculature of body
58
bone element
31
nerve
18
ureter
15
vein
10
embryo
6
eye
1
blood
1
bodily fluid
1
pericardium
1
pituitary gland
Project
229
AMP
Genome assembly (visualization)
229
hg19
186
GRCh38
Lab
195
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
files.file_type!
fastq
BIOSAMPLE
ASSAY
229 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
Hi-C
tissue
liver
147
32
20
1
right lobe of liver
2
2
cell line
HepG2
14
primary cell
hepatocyte
5
3
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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