Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
total RNA-seq
43
ChIP-seq
5
ATAC-seq
4
DNase-seq
3
small RNA-seq
2
WGBS
Assay category
402
Transcription
43
DNA binding
9
DNA accessibility
2
DNA methylation
Target of assay
26
histone
26
histone modification
17
transcription factor
16
broad histone mark
10
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
32
October, 2019
17
August, 2017
12
July, 2019
5
October, 2018
1
January, 2018
1
June, 2019
1
November, 2018
1
October, 2017
Available data
484
bam
456
bigWig
406
tsv
44
fastq
40
bed narrowPeak
36
bigBed narrowPeak
8
bed bed3+
8
tagAlign
5
bed broadPeak
4
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
456
Homo sapiens
Biosample type
454
tissue
2
primary cell
Organ
623
pancreas
622
liver
570
connective tissue
425
adipose tissue
301
epithelium
222
brain
184
heart
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
456
AMP
Genome assembly (visualization)
454
hg19
453
GRCh38
Lab
456
AMP-T2D consortium
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
456 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
WGBS
tissue
adipose tissue
381
1
2
2
tibial nerve
4
24
1
2
white adipose tissue
12
omental fat pad
4
3
1
2
1
subcutaneous adipose tissue
6
2
1
1
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
See all biosamples
Download