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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
total RNA-seq
129
ChIP-seq
100
single cell RNA-seq
78
ATAC-seq
29
DNase-seq
4
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
254
Transcription
129
DNA binding
108
DNA accessibility
4
3D chromatin structure
Target of assay
230
histone
230
histone modification
broad histone mark
112
narrow histone mark
10
RNA binding protein
10
control
10
transcription factor
1
chromatin remodeller
Date released
107
May, 2021
90
May, 2020
55
September, 2018
48
July, 2018
43
April, 2018
39
June, 2019
30
August, 2017
22
July, 2019
13
October, 2019
9
November, 2017
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
September, 2020
2
August, 2021
2
February, 2021
2
May, 2019
2
October, 2018
Available data
509
bam
495
bigWig
376
fastq
270
tsv
183
bed narrowPeak
153
zippedFastqFolder
88
bigBed narrowPeak
49
tagAlign
41
bed broadPeak
41
bigBed broadPeak
36
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
495
Homo sapiens
Biosample type
1499
tissue
504
cell line
495
primary cell
222
in vitro differentiated cells
2
stem cell
Organ
202
epithelium
165
pancreas
28
connective tissue
23
kidney
22
vasculature
20
brain
17
blood vessel
10
heart
10
liver
8
vein
7
musculature of body
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
349
AMP
136
T1D
10
HPAP
Genome assembly (visualization)
478
hg19
423
GRCh38
Lab
334
AMP-T2D consortium
151
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
30
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
495 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
FAIRE-seq
primary cell
monocyte
53
40
2
pancreatic alpha cell
10
4
12
13
pancreatic beta cell
10
4
12
10
pancreatic acinar cell
4
4
12
5
pancreatic ductal cell
4
7
10
4
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