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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
342
ChIP-seq
177
DNase-seq
43
ATAC-seq
16
WGBS
16
small RNA-seq
4
FAIRE-seq
Assay category
917
Transcription
342
DNA binding
224
DNA accessibility
16
DNA methylation
Target of assay
487
histone modification
486
histone
253
narrow histone mark
broad histone mark
88
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
170
May, 2020
163
June, 2019
145
August, 2017
121
October, 2019
116
July, 2018
63
July, 2019
38
May, 2021
37
May, 2019
33
December, 2017
28
April, 2019
26
October, 2018
23
November, 2018
20
May, 2022
20
November, 2017
19
November, 2019
11
March, 2020
9
October, 2017
6
April, 2018
3
December, 2018
2
January, 2018
2
January, 2019
Available data
1685
bam
1499
bigWig
1076
tsv
711
bed narrowPeak
357
bigBed narrowPeak
332
fastq
199
bed bed3+
193
bed broadPeak
176
bigBed broadPeak
162
tagAlign
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1497
Homo sapiens
Biosample type
1499
tissue
504
cell line
495
primary cell
222
in vitro differentiated cells
2
stem cell
Organ
481
connective tissue
423
adipose tissue
336
pancreas
252
liver
142
brain
81
kidney
80
heart
58
bone element
57
limb
45
musculature of body
34
blood vessel
34
vasculature
18
ureter
15
nerve
13
artery
12
spleen
3
eye
1
pituitary gland
Project
1497
AMP
2
T1D
Genome assembly (visualization)
1451
GRCh38
1449
hg19
Lab
1478
AMP-T2D consortium
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
1499 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
266
19
1
3
1
liver
147
72
2
20
1
bone tissue
58
body of pancreas
2
15
4
4
2
2
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