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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
604
ChIP-seq
Assay category
604
DNA binding
Target of assay
604
histone modification
603
histone
481
transcription factor
313
narrow histone mark
289
broad histone mark
91
RNA binding protein
88
recombinant protein
35
chromatin remodeller
13
control
5
other context
5
other post-translational modification
Date released
151
October, 2019
89
May, 2019
85
August, 2017
72
November, 2017
60
April, 2019
30
December, 2017
30
October, 2018
27
May, 2020
16
August, 2021
16
February, 2018
10
November, 2019
7
January, 2019
6
October, 2017
3
March, 2020
2
May, 2021
Available data
604
bigWig
600
bed narrowPeak
582
bam
344
bigBed narrowPeak
223
tagAlign
157
fastq
49
bed broadPeak
22
bed bed3+
14
bigBed broadPeak
1
tagAlign bed3+
Organism
598
Homo sapiens
Biosample type
487
tissue
primary cell
78
in vitro differentiated cells
37
cell line
2
stem cell
Organ
163
brain
84
pancreas
80
liver
60
heart
54
blood vessel
54
vasculature
48
limb
27
connective tissue
27
epithelium
24
nerve
20
artery
20
kidney
19
musculature of body
11
embryo
6
spleen
2
adipose tissue
1
blood
1
bodily fluid
1
pituitary gland
Project
600
AMP
4
T1D
Genome assembly (visualization)
568
GRCh38
552
hg19
Lab
601
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
16
inconsistent ontology term
Audit category:
8
missing controlled_by
Audit category:
26
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
BIOSAMPLE
ASSAY
604 results
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Clear Filters
ChIP-seq
tissue
liver
45
heart left ventricle
24
tibial nerve
24
islet of Langerhans
22
kidney
20
+ See 97 more…
in vitro differentiated cells
adipocyte
25
neural progenitor cell
13
hepatocyte
12
pancreatic endoderm
9
definitive endodermal cell
4
+ See 7 more…
cell line
HepG2
18
EndoC_BH1
12
Panc1
6
GM12878
1
stem cell
hESC
2
See all biosamples
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