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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
RRBS
8
WGBS
3
Hi-C
1
FAIRE-seq
Assay category
23
DNA methylation
3
3D chromatin structure
1
DNA accessibility
Date released
23
July, 2019
3
October, 2022
1
October, 2019
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
27
Homo sapiens
Biosample type
14
tissue
13
primary cell
Organ
10
epithelium
8
heart
5
pancreas
4
kidney
3
vasculature
2
blood vessel
2
brain
2
musculature of body
1
connective tissue
1
eye
1
limb
1
liver
1
pericardium
1
vein
Project
24
AMP
3
HPAP
Genome assembly (visualization)
19
hg19
8
GRCh38
Lab
24
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
2
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
27 results
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RRBS
WGBS
Hi-C
FAIRE-seq
tissue
heart left ventricle
1
2
heart right ventricle
2
aorta
1
brain
1
heart
1
+ See 6 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
+ See 8 more…
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