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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
ChIP-seq
3
Hi-C
2
ATAC-seq
Assay category
208
DNA accessibility
3
3D chromatin structure
Date released
187
June, 2019
9
November, 2018
7
October, 2019
3
October, 2022
2
August, 2017
1
March, 2019
1
November, 2020
1
October, 2017
Available data
1814
bam
1779
bigWig
1600
tsv
501
fastq
492
bed narrowPeak
241
bigBed narrowPeak
220
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
211
Homo sapiens
Biosample type
178
tissue
31
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
12
pancreas
11
vasculature
9
blood vessel
9
connective tissue
5
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
208
AMP
3
HPAP
Genome assembly (visualization)
206
GRCh38
187
hg19
Lab
206
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
3
audit script error
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
211 results
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Clear Filters
DNase-seq
Hi-C
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 40 more…
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
+ See 21 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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