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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
Assay category
120
DNA binding
3D chromatin structure
Target of assay
66
control
54
histone
54
histone modification
33
broad histone mark
21
narrow histone mark
Date released
47
August, 2017
23
May, 2020
21
November, 2017
9
October, 2019
8
August, 2021
8
October, 2017
3
February, 2021
1
May, 2021
Available data
3392
bam
bigWig
1817
bed narrowPeak
1600
tsv
1357
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
268
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
4
tar
3
bedpe bed3+
2
ibed
1
tagAlign bed3+
1
vcf
0
cool
Organism
119
Homo sapiens
Biosample type
94
tissue
22
in vitro differentiated cells
3
cell line
1
primary cell
Organ
44
liver
36
brain
21
connective tissue
7
adipose tissue
5
pancreas
2
artery
2
blood vessel
2
epithelium
2
heart
2
musculature of body
2
vasculature
Project
120
AMP
Genome assembly (visualization)
1
GRCh38
Lab
120
AMP-T2D consortium
Audit category:
1
missing controlled_by
assay_slims!
3D chromatin structure
files.file_type!
bigWig
BIOSAMPLE
ASSAY
120 results
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Clear Filters
ChIP-seq
tissue
liver
43
brain
8
cingulate gyrus
8
subcutaneous abdominal adipose tissue
7
layer of hippocampus
4
+ See 15 more…
in vitro differentiated cells
adipocyte
14
neural progenitor cell
7
pancreatic PP cell
1
cell line
smooth muscle cell of the coronary artery
2
iPSC derived cell line
1
primary cell
hepatocyte
1
See all biosamples
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