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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
294
ChIP-seq
Assay category
294
DNA binding
Target of assay
226
histone
226
histone modification
129
narrow histone mark
97
broad histone mark
64
control
4
transcription factor
Date released
85
August, 2017
66
November, 2017
50
May, 2020
49
October, 2019
24
August, 2021
14
October, 2017
6
May, 2021
Available data
2628
bam
2455
bigWig
1379
tsv
1327
bed narrowPeak
762
fastq
687
bigBed narrowPeak
294
tagAlign
270
bed bed3+
263
bed broadPeak
226
bigBed broadPeak
160
txt
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
18
bedpe bed3+
17
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
0
cool
Organism
287
Homo sapiens
Biosample type
238
tissue
40
in vitro differentiated cells
cell line
16
primary cell
Organ
118
brain
74
liver
22
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
7
epithelium
1
pituitary gland
Project
294
AMP
84
T1D
3
HPAP
Genome assembly (visualization)
148
GRCh38
137
hg19
Lab
294
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
2
inconsistent assembly
biosample_type!
cell line
BIOSAMPLE
ASSAY
294 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 43 more…
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
primary cell
skeletal muscle myoblast
12
hepatocyte
4
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