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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
single cell RNA-seq
3
ChIP-seq
3
Hi-C
1
FAIRE-seq
Assay category
8
Transcription
3
3D chromatin structure
3
DNA binding
1
DNA accessibility
Target of assay
3
transcription factor
1
RNA binding protein
Date released
6
February, 2021
3
November, 2017
3
October, 2022
1
November, 2018
1
October, 2019
1
September, 2018
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
15
Homo sapiens
Biosample type
6
primary cell
6
tissue
3
cell line
Organ
5
kidney
4
epithelium
4
liver
3
pancreas
1
blood vessel
1
vasculature
1
vein
Project
12
AMP
3
HPAP
Genome assembly (visualization)
7
hg19
Lab
12
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
8
audit script error
BIOSAMPLE
ASSAY
15 results
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Clear Filters
single cell RNA-seq
ChIP-seq
Hi-C
FAIRE-seq
primary cell
pancreatic cell
2
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
kidney
5
liver
1
cell line
HepG2
3
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