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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
3
single cell RNA-seq
Assay category
5
3D chromatin structure
3
Transcription
Date released
4
July, 2019
1
February, 2021
1
November, 2018
1
October, 2019
1
September, 2018
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1591
tsv
1331
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
272
bed bed3+
155
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
8
Homo sapiens
Biosample type
6
primary cell
1
cell line
1
tissue
Organ
3
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
connective tissue
1
pancreas
Project
8
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
8
AMP-T2D consortium
Audit category:
audit script error
Audit category:
1
inconsistent assembly
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
8 results
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Hi-C
single cell RNA-seq
primary cell
pancreatic cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
Panc1
1
tissue
liver
1
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