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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
WGBS
55
single cell RNA-seq
39
ATAC-seq
21
snATAC-seq
19
RRBS
Assay category
77
DNA methylation
60
DNA accessibility
55
Transcription
Date released
134
May, 2022
23
July, 2019
19
September, 2020
8
November, 2018
6
August, 2017
1
February, 2021
1
September, 2018
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1591
tsv
1331
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
272
bed bed3+
155
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
192
Homo sapiens
Biosample type
165
primary cell
26
tissue
1
cell line
Organ
86
epithelium
86
pancreas
8
heart
4
kidney
4
liver
4
musculature of body
3
connective tissue
2
adipose tissue
2
brain
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
153
HPAP
39
AMP
Genome assembly (visualization)
19
hg19
17
GRCh38
Lab
153
Klaus Kaestner, Upenn
39
AMP-T2D consortium
Audit category:
audit script error
2
inconsistent ontology term
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
192 results
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Clear Filters
WGBS
single cell RNA-seq
ATAC-seq
snATAC-seq
RRBS
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
pancreatic cell
2
+ See 10 more…
tissue
heart left ventricle
2
1
pancreas
2
1
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 11 more…
cell line
HepG2
1
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