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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
single cell RNA-seq
5
Hi-C
1
ChIP-seq
Assay category
8
Transcription
5
3D chromatin structure
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
6
February, 2021
4
July, 2019
2
October, 2019
1
November, 2018
1
September, 2018
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
14
Homo sapiens
Biosample type
7
tissue
6
primary cell
1
cell line
Organ
5
kidney
4
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
connective tissue
1
pancreas
Project
14
AMP
Genome assembly (visualization)
6
hg19
2
GRCh38
Lab
14
AMP-T2D consortium
Audit category:
5
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
14 results
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Clear Filters
single cell RNA-seq
Hi-C
ChIP-seq
tissue
kidney
5
liver
1
medial globus pallidus
1
primary cell
pancreatic cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
Panc1
1
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