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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
Hi-C
19
RRBS
17
WGBS
8
single cell RNA-seq
3
pCHi-C
Assay category
36
DNA methylation
20
3D chromatin structure
8
Transcription
Date released
23
July, 2019
12
March, 2020
8
November, 2018
6
August, 2017
6
February, 2021
3
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
August, 2018
1
September, 2018
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
67
Homo sapiens
Biosample type
41
tissue
16
primary cell
7
in vitro differentiated cells
3
cell line
Organ
13
pancreas
11
epithelium
11
heart
9
kidney
6
liver
6
musculature of body
4
connective tissue
4
vasculature
3
adipose tissue
3
blood vessel
2
brain
2
spleen
1
eye
1
limb
1
pericardium
1
vein
Project
64
AMP
3
HPAP
Genome assembly (visualization)
40
hg19
17
GRCh38
Lab
62
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
9
inconsistent ontology term
8
audit script error
BIOSAMPLE
ASSAY
67 results
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Clear Filters
Hi-C
RRBS
WGBS
single cell RNA-seq
pCHi-C
tissue
kidney
1
5
heart left ventricle
1
1
2
pancreas
1
1
2
heart right ventricle
1
2
islet of Langerhans
2
1
+ See 12 more…
primary cell
pancreatic cell
2
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
endothelial cell of umbilical vein
1
+ See 10 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
cell line
HepG2
1
1
EndoC_BH1
1
See all biosamples
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