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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
RRBS
WGBS
8
single cell RNA-seq
Assay category
19
DNA methylation
8
Transcription
Date released
15
July, 2019
6
February, 2021
4
August, 2017
1
November, 2018
1
September, 2018
Available data
2934
bam
2729
bigWig
1804
bed narrowPeak
1300
fastq
1193
tsv
1032
bigBed narrowPeak
390
tagAlign
319
bed broadPeak
283
bigBed broadPeak
267
bed bed3+
161
txt
112
zippedFastqFolder
64
xls
23
hic
22
bedpe bed3+
19
bed bedMethyl
19
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
27
Homo sapiens
Biosample type
15
tissue
12
primary cell
Organ
9
kidney
6
epithelium
3
liver
3
musculature of body
2
brain
2
heart
2
pancreas
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
27
AMP
Genome assembly (visualization)
19
hg19
Lab
27
AMP-T2D consortium
Audit category:
5
audit script error
2
inconsistent ontology term
organ_slims!
adipose tissue
assay_title!
WGBS
BIOSAMPLE
ASSAY
27 results
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RRBS
single cell RNA-seq
tissue
kidney
1
5
liver
1
1
skeletal muscle tissue
2
brain
1
heart left ventricle
1
+ See 3 more…
primary cell
pancreatic cell
2
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
+ See 6 more…
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