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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
Hi-C
8
single cell RNA-seq
Assay category
23
3D chromatin structure
8
Transcription
Date released
10
March, 2020
6
February, 2021
4
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
March, 2019
1
March, 2023
1
November, 2018
1
September, 2018
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
31
Homo sapiens
Biosample type
17
tissue
8
primary cell
4
in vitro differentiated cells
2
cell line
Organ
7
pancreas
6
epithelium
6
kidney
3
blood vessel
3
heart
3
liver
3
vasculature
2
musculature of body
2
vein
Project
27
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
22
hg19
1
GRCh38
Lab
24
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
9
audit script error
5
inconsistent ontology term
BIOSAMPLE
ASSAY
31 results
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Clear Filters
Hi-C
single cell RNA-seq
tissue
kidney
1
5
islet of Langerhans
2
liver
1
1
psoas muscle
2
aorta
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
2
pancreatic cell
2
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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