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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
single cell RNA-seq
4
Hi-C
Assay category
8
Transcription
4
3D chromatin structure
Date released
6
February, 2021
4
July, 2019
1
November, 2018
1
September, 2018
Available data
3389
bam
3125
bigWig
1774
bed narrowPeak
1600
tsv
1355
fastq
1039
bigBed narrowPeak
396
tagAlign
320
bed broadPeak
284
bigBed broadPeak
272
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
12
Homo sapiens
Biosample type
6
primary cell
6
tissue
Organ
5
kidney
3
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
connective tissue
Project
12
AMP
Genome assembly (visualization)
4
hg19
Lab
12
AMP-T2D consortium
Audit category:
5
audit script error
Audit category:
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
12 results
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single cell RNA-seq
Hi-C
primary cell
pancreatic cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
tissue
kidney
5
liver
1
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