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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
Hi-C
6
single cell RNA-seq
Assay category
11
3D chromatin structure
6
Transcription
Date released
7
March, 2020
6
February, 2021
1
August, 2021
1
March, 2019
1
November, 2019
1
October, 2019
Available data
1907
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
17
Homo sapiens
Biosample type
17
tissue
8
primary cell
4
in vitro differentiated cells
2
cell line
Organ
6
kidney
3
heart
3
pancreas
2
liver
2
musculature of body
1
blood vessel
1
vasculature
Project
17
AMP
Genome assembly (visualization)
11
hg19
Lab
15
AMP-T2D consortium
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
5
audit script error
BIOSAMPLE
ASSAY
17 results
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Hi-C
single cell RNA-seq
tissue
kidney
1
5
islet of Langerhans
2
liver
1
1
psoas muscle
2
aorta
1
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