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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
total RNA-seq
128
single cell RNA-seq
61
ATAC-seq
27
snATAC-seq
12
DNase-seq
5
GRO-seq
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
DNA binding
371
Transcription
102
DNA accessibility
DNA methylation
1
3D chromatin structure
Date released
98
August, 2017
76
February, 2023
50
July, 2018
44
April, 2018
41
September, 2018
41
September, 2020
39
February, 2021
24
May, 2022
15
February, 2018
11
November, 2018
8
October, 2017
7
August, 2020
5
January, 2018
5
January, 2019
5
September, 2017
4
August, 2018
3
June, 2018
2
October, 2018
1
December, 2018
1
March, 2019
Available data
1796
bam
1762
bigWig
1594
tsv
492
bed narrowPeak
480
fastq
241
bigBed narrowPeak
220
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
161
txt
112
zippedFastqFolder
64
xls
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
480
Homo sapiens
Biosample type
308
primary cell
144
tissue
21
in vitro differentiated cells
6
cell line
1
stem cell
Organ
314
pancreas
179
epithelium
10
liver
8
connective tissue
5
embryo
4
adipose tissue
3
brain
2
spleen
Project
317
AMP
163
HPAP
Genome assembly (visualization)
300
hg19
290
GRCh38
5
hg18
Lab
291
AMP-T2D consortium
163
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
7
inconsistent ontology term
assay_slims!
DNA binding
DNA methylation
BIOSAMPLE
ASSAY
480 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
GRO-seq
FAIRE-seq
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
52
12
13
Langerhans cell
34
27
pancreatic beta cell
21
12
10
exocrine cell
39
pancreatic acinar cell
4
9
5
+ See 14 more…
tissue
islet of Langerhans
103
20
1
1
body of pancreas
4
2
brain
2
liver
2
omental fat pad
1
1
+ See 5 more…
in vitro differentiated cells
pancreatic endoderm
4
1
definitive endodermal cell
2
1
primitive gut cell
2
1
embryonic stem cell
2
endocrine cell
2
+ See 5 more…
cell line
HepG2
5
1
stem cell
hESC
1
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