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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
total RNA-seq
92
single cell RNA-seq
49
ATAC-seq
12
DNase-seq
4
RRBS
2
FAIRE-seq
Assay category
DNA binding
237
Transcription
63
DNA accessibility
4
DNA methylation
Date released
102
August, 2017
50
July, 2018
44
April, 2018
40
September, 2018
18
May, 2022
15
February, 2018
10
November, 2018
7
October, 2017
5
January, 2019
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
Available data
1764
bam
1722
bigWig
1402
tsv
370
bed narrowPeak
304
fastq
218
bigBed narrowPeak
197
bed bed3+
184
bed broadPeak
183
bigBed broadPeak
22
hic
21
bedpe bed3+
19
bed bedMethyl
19
bigBed bedMethyl
12
bed bed3
7
bed bedgraph
5
hdf5
4
txt
3
cool
2
ibed
1
bedpe
1
tar
Organism
304
Homo sapiens
Biosample type
144
primary cell
139
tissue
16
in vitro differentiated cells
5
cell line
Organ
244
pancreas
116
epithelium
10
liver
7
connective tissue
4
embryo
3
adipose tissue
2
brain
2
musculature of body
2
spleen
Project
304
AMP
Genome assembly (visualization)
304
hg19
299
GRCh38
5
hg18
Lab
285
AMP-T2D consortium
18
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
7
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
304 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
RRBS
FAIRE-seq
primary cell
pancreatic beta cell
10
12
7
pancreatic alpha cell
10
12
6
pancreatic acinar cell
4
9
5
pancreatic ductal cell
4
9
4
pancreatic delta cell
11
+ See 12 more…
tissue
islet of Langerhans
97
19
1
1
body of pancreas
4
2
liver
2
1
brain
2
omental fat pad
1
1
+ See 5 more…
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 3 more…
cell line
HepG2
5
See all biosamples
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