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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
66
single cell RNA-seq
32
ATAC-seq
6
WGBS
Assay category
147
Transcription
DNA binding
32
DNA accessibility
6
DNA methylation
Date released
40
September, 2018
37
February, 2023
33
July, 2018
29
April, 2018
19
September, 2020
7
August, 2020
6
February, 2021
5
September, 2017
3
August, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
200
bigWig
188
bam
185
fastq
156
tsv
80
zippedFastqFolder
54
bed narrowPeak
40
bigBed narrowPeak
18
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
185
Homo sapiens
Biosample type
185
primary cell
Organ
324
pancreas
185
epithelium
13
liver
11
connective tissue
7
adipose tissue
5
embryo
4
spleen
3
brain
2
musculature of body
Project
116
AMP
69
HPAP
Genome assembly (visualization)
126
GRCh38
116
hg19
Lab
116
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
185 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
primary cell
pancreatic alpha cell
52
12
13
6
pancreatic beta cell
21
12
10
pancreatic acinar cell
4
9
5
pancreatic ductal cell
4
9
4
pancreatic delta cell
11
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