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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
243
total RNA-seq
128
single cell RNA-seq
61
ATAC-seq
27
snATAC-seq
17
WGBS
DNase-seq
5
GRO-seq
4
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
371
Transcription
90
DNA accessibility
21
DNA methylation
1
3D chromatin structure
Date released
103
August, 2017
76
February, 2023
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2018
41
September, 2020
24
May, 2022
15
February, 2018
9
November, 2018
8
October, 2017
7
August, 2020
5
January, 2018
5
January, 2019
5
September, 2017
4
August, 2018
3
June, 2018
2
October, 2018
1
December, 2018
1
March, 2019
Available data
1605
bam
1600
tsv
1570
bigWig
489
fastq
283
bed narrowPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
32
bigBed narrowPeak
23
bedpe bed3+
23
hic
16
bed bed3+
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
bed broadPeak
2
ibed
1
bedpe
1
tar
1
vcf
Organism
489
Homo sapiens
Biosample type
314
primary cell
147
tissue
20
in vitro differentiated cells
7
cell line
1
stem cell
Organ
321
pancreas
185
epithelium
10
liver
9
connective tissue
6
adipose tissue
5
embryo
3
spleen
2
musculature of body
1
brain
Project
320
AMP
169
HPAP
Genome assembly (visualization)
292
hg19
288
GRCh38
5
hg18
Lab
294
AMP-T2D consortium
169
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
7
inconsistent ontology term
assay_title!
DNase-seq
ChIP-seq
BIOSAMPLE
ASSAY
489 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
52
12
13
6
Langerhans cell
34
27
pancreatic beta cell
21
12
10
exocrine cell
39
pancreatic acinar cell
4
9
5
+ See 14 more…
tissue
islet of Langerhans
103
20
1
body of pancreas
4
2
adipose tissue
3
pancreas
2
1
spleen
1
2
+ See 6 more…
in vitro differentiated cells
pancreatic endoderm
4
1
definitive endodermal cell
2
1
primitive gut cell
2
1
embryonic stem cell
2
endocrine cell
2
+ See 4 more…
cell line
HepG2
5
1
1
stem cell
hESC
1
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