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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
243
total RNA-seq
128
single cell RNA-seq
61
ATAC-seq
27
snATAC-seq
17
WGBS
12
DNase-seq
GRO-seq
4
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
371
Transcription
102
DNA accessibility
21
DNA methylation
1
3D chromatin structure
Date released
106
August, 2017
76
February, 2023
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2018
41
September, 2020
24
May, 2022
18
November, 2018
15
February, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
September, 2017
4
August, 2018
3
June, 2018
2
October, 2018
1
December, 2018
1
March, 2019
Available data
1814
bam
1774
bigWig
1600
tsv
496
fastq
492
bed narrowPeak
241
bigBed narrowPeak
220
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
496
Homo sapiens
Biosample type
315
primary cell
157
tissue
17
in vitro differentiated cells
7
cell line
Organ
324
pancreas
185
epithelium
13
liver
11
connective tissue
7
adipose tissue
4
embryo
4
spleen
3
brain
2
musculature of body
Project
327
AMP
169
HPAP
Genome assembly (visualization)
304
hg19
299
GRCh38
Lab
301
AMP-T2D consortium
169
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
7
inconsistent ontology term
assay_title!
GRO-seq
ChIP-seq
BIOSAMPLE
ASSAY
496 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
52
12
13
6
Langerhans cell
34
27
pancreatic beta cell
21
12
10
exocrine cell
39
pancreatic acinar cell
4
9
5
+ See 14 more…
tissue
islet of Langerhans
103
20
1
1
body of pancreas
4
2
2
liver
1
2
1
spleen
1
2
1
adipose tissue
3
+ See 7 more…
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 4 more…
cell line
HepG2
5
1
1
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