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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
36
single cell RNA-seq
27
snATAC-seq
17
ChIP-seq
6
WGBS
1
DNase-seq
1
RRBS
Assay category
128
Transcription
28
DNA accessibility
17
DNA binding
7
DNA methylation
Target of assay
16
control
1
RNA binding protein
1
transcription factor
Date released
76
February, 2023
45
February, 2021
38
September, 2020
16
August, 2017
3
November, 2017
1
November, 2018
1
September, 2018
Available data
180
fastq
153
zippedFastqFolder
94
bigWig
84
bam
34
bed narrowPeak
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
5
hic
4
bed broadPeak
4
bedpe bed3+
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
3
cool
2
csv
2
tagAlign
1
tar
Organism
180
Homo sapiens
Biosample type
180
primary cell
106
cell line
97
tissue
23
in vitro differentiated cells
1
stem cell
Organ
73
epithelium
71
pancreas
3
brain
2
vasculature
1
blood vessel
Project
159
HPAP
21
AMP
Genome assembly (visualization)
GRCh38
226
hg19
Lab
159
Klaus Kaestner, Upenn
21
AMP-T2D consortium
Audit category:
27
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
180 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ChIP-seq
WGBS
DNase-seq
RRBS
primary cell
Langerhans cell
34
27
pancreatic alpha cell
42
6
6
exocrine cell
39
pancreatic beta cell
11
6
skeletal muscle myoblast
2
1
1
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