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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
98
total RNA-seq
36
single cell RNA-seq
27
snATAC-seq
17
WGBS
12
ATAC-seq
5
GRO-seq
1
Hi-C
1
pCHi-C
Assay category
134
Transcription
39
DNA accessibility
17
DNA methylation
1
3D chromatin structure
Date released
76
February, 2023
45
February, 2021
41
September, 2020
8
November, 2018
7
August, 2020
6
May, 2022
5
January, 2018
4
August, 2017
1
August, 2018
1
December, 2018
1
March, 2019
1
October, 2017
1
September, 2018
Available data
198
tsv
197
fastq
157
txt
153
zippedFastqFolder
122
bed narrowPeak
64
xls
57
bigWig
50
bam
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
23
bigBed narrowPeak
17
bed bedMethyl
17
bigBed bedMethyl
8
csv
2
bedpe bed3+
1
hic
1
vcf
Organism
197
Homo sapiens
Biosample type
171
primary cell
18
tissue
5
in vitro differentiated cells
2
cell line
1
stem cell
Organ
80
pancreas
69
epithelium
4
adipose tissue
4
connective tissue
3
liver
2
spleen
1
brain
1
embryo
Project
169
HPAP
28
AMP
Genome assembly (visualization)
hg19
299
GRCh38
5
hg18
Lab
169
Klaus Kaestner, Upenn
21
AMP-T2D consortium
6
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
audit script error
assembly!
hg19
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
197 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ATAC-seq
GRO-seq
Hi-C
pCHi-C
primary cell
Langerhans cell
34
27
pancreatic alpha cell
42
6
7
exocrine cell
39
pancreatic beta cell
11
3
pancreatic cell
2
tissue
islet of Langerhans
6
1
adipose tissue
3
body of pancreas
2
pancreas
2
spleen
2
+ See 2 more…
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
white fat cell
1
cell line
HepG2
1
1
stem cell
hESC
1
See all biosamples
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