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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
single cell RNA-seq
4
ChIP-seq
4
DNase-seq
Assay category
7
Transcription
4
DNA accessibility
4
DNA binding
Target of assay
2
control
2
histone
2
histone modification
2
narrow histone mark
Date released
6
July, 2018
4
December, 2017
4
June, 2019
1
June, 2018
Available data
212
bam
192
bigWig
150
tsv
85
txt
63
bed narrowPeak
24
bigBed narrowPeak
11
fastq
7
bedpe bed3+
6
bed bed3+
5
hic
4
bed broadPeak
4
bigBed broadPeak
3
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
2
ibed
1
bed bedgraph
Organism
15
Homo sapiens
Biosample type
10
primary cell
4
in vitro differentiated cells
1
tissue
Organ
6
epithelium
5
pancreas
4
embryo
1
connective tissue
1
heart
1
kidney
1
limb
1
musculature of body
1
vasculature
Project
15
AMP
Genome assembly (visualization)
13
GRCh38
13
hg19
Lab
15
AMP-T2D consortium
Audit category:
28
inconsistent control
27
audit script error
15
inconsistent ontology term
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
15 results
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single cell RNA-seq
ChIP-seq
DNase-seq
primary cell
co-expressing pancreatic endocrine cell
2
unclassified exocrine cell
2
unclassified pancreatic endocrine cell
2
cardiac fibroblast
1
epithelial cell of proximal tubule
1
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in vitro differentiated cells
Hepatic endoderm
4
tissue
muscle of leg
1
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