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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
Assay category
84
DNA binding
Target of assay
449
transcription factor
157
histone modification
156
histone
152
control
85
broad histone mark
84
RNA binding protein
82
recombinant protein
70
narrow histone mark
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
34
November, 2017
21
November, 2018
11
October, 2018
6
August, 2017
6
January, 2019
4
December, 2017
2
December, 2018
Available data
93
bam
91
bigWig
90
bed narrowPeak
84
fastq
83
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
tar
Organism
84
Homo sapiens
Biosample type
63
cell line
15
tissue
6
in vitro differentiated cells
primary cell
Organ
57
liver
10
blood
10
bodily fluid
9
connective tissue
8
pancreas
5
adipose tissue
2
epithelium
Project
84
AMP
Genome assembly (visualization)
81
hg19
78
GRCh38
Lab
84
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
biosample_type!
primary cell
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
cell line
HepG2
53
GM12878
10
tissue
body of pancreas
5
omental fat pad
3
islet of Langerhans
2
subcutaneous adipose tissue
2
liver
1
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in vitro differentiated cells
adipocyte
4
hepatocyte
2
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