Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
420
ChIP-seq
total RNA-seq
1
Hi-C
1
WGBS
Assay category
420
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
337
transcription factor
82
recombinant protein
63
RNA binding protein
62
control
30
chromatin remodeller
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
61
November, 2018
28
December, 2018
18
January, 2019
Available data
478
bam
422
fastq
418
bigWig
404
bed narrowPeak
355
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
6
tsv
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
422
Homo sapiens
Biosample type
422
cell line
289
primary cell
274
tissue
126
in vitro differentiated cells
4
stem cell
Organ
362
liver
60
blood
60
bodily fluid
Project
422
AMP
Genome assembly (visualization)
362
hg19
316
GRCh38
Lab
422
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
422 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
WGBS
cell line
HepG2
360
1
1
GM12878
60
See all biosamples
Download