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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
419
ChIP-seq
5
total RNA-seq
1
Hi-C
1
WGBS
Assay category
419
DNA binding
5
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
336
transcription factor
82
recombinant protein
63
RNA binding protein
62
control
29
chromatin remodeller
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
61
November, 2018
27
December, 2018
23
January, 2019
Available data
581
bam
521
bigWig
426
fastq
403
bed narrowPeak
354
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
426
Homo sapiens
Biosample type
426
cell line
409
primary cell
350
tissue
141
in vitro differentiated cells
4
stem cell
Organ
367
liver
59
blood
59
bodily fluid
Project
426
AMP
Genome assembly (visualization)
366
hg19
320
GRCh38
Lab
426
AMP-T2D consortium
Audit category:
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
426 results
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ChIP-seq
total RNA-seq
Hi-C
WGBS
cell line
HepG2
360
5
1
1
GM12878
59
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