Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
138
ChIP-seq
21
ATAC-seq
15
total RNA-seq
4
GRO-seq
1
DNase-seq
1
pCHi-C
Assay category
138
DNA binding
22
DNA accessibility
15
Transcription
Target of assay
79
histone
79
histone modification
41
narrow histone mark
37
broad histone mark
37
transcription factor
22
control
6
RNA binding protein
3
chromatin remodeller
Date released
54
August, 2017
43
December, 2017
39
February, 2018
25
August, 2021
5
May, 2021
5
November, 2019
4
January, 2018
2
February, 2023
2
October, 2019
1
August, 2018
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
180
Homo sapiens
Biosample type
1152
tissue
615
primary cell
484
cell line
180
in vitro differentiated cells
4
stem cell
Organ
57
connective tissue
27
embryo
21
epithelium
15
liver
2
pancreas
1
adipose tissue
Project
180
AMP
Genome assembly (visualization)
156
hg19
153
GRCh38
4
hg18
Lab
176
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
15
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
BIOSAMPLE
ASSAY
180 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
53
1
1
neural progenitor cell
13
10
pancreatic endoderm
18
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
+ See 15 more…
See all biosamples
Download