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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
15
total RNA-seq
4
GRO-seq
1
DNase-seq
1
pCHi-C
Assay category
114
DNA binding
15
Transcription
1
DNA accessibility
Target of assay
65
histone
65
histone modification
33
narrow histone mark
33
transcription factor
31
broad histone mark
22
control
RNA binding protein
3
chromatin remodeller
Date released
50
August, 2017
41
December, 2017
39
February, 2018
4
January, 2018
1
August, 2018
Available data
285
bam
253
bigWig
135
fastq
131
tsv
126
bed narrowPeak
40
tagAlign
25
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
135
Homo sapiens
Biosample type
404
primary cell
364
cell line
362
tissue
135
in vitro differentiated cells
4
stem cell
Organ
51
connective tissue
27
embryo
17
epithelium
13
liver
1
adipose tissue
Project
135
AMP
Genome assembly (visualization)
112
GRCh38
112
hg19
4
hg18
Lab
135
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
135 results
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ChIP-seq
total RNA-seq
GRO-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
49
1
pancreatic endoderm
18
4
1
hepatocyte
13
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
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