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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
15
total RNA-seq
4
GRO-seq
1
DNase-seq
1
pCHi-C
Assay category
98
DNA binding
15
Transcription
1
DNA accessibility
Target of assay
65
histone
65
histone modification
33
narrow histone mark
33
transcription factor
31
broad histone mark
control
6
RNA binding protein
3
chromatin remodeller
Date released
48
August, 2017
35
December, 2017
31
February, 2018
4
January, 2018
1
August, 2018
Available data
261
bam
259
bigWig
132
bed narrowPeak
131
tsv
119
fastq
30
tagAlign
20
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
119
Homo sapiens
Biosample type
393
primary cell
365
cell line
310
tissue
119
in vitro differentiated cells
3
stem cell
Organ
49
connective tissue
20
embryo
16
epithelium
14
liver
1
adipose tissue
Project
119
AMP
Genome assembly (visualization)
113
GRCh38
113
hg19
4
hg18
Lab
119
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
target.investigated_as!
control
BIOSAMPLE
ASSAY
119 results
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ChIP-seq
total RNA-seq
GRO-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
47
1
pancreatic endoderm
13
4
1
hepatocyte
14
definitive endodermal cell
6
2
1
primitive gut cell
6
2
1
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