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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
640
ChIP-seq
108
total RNA-seq
29
ATAC-seq
11
WGBS
10
DNase-seq
3
RRBS
2
FAIRE-seq
1
Hi-C
Assay category
640
DNA binding
108
Transcription
41
DNA accessibility
14
DNA methylation
1
3D chromatin structure
Target of assay
416
transcription factor
129
control
90
histone modification
89
histone
82
recombinant protein
78
RNA binding protein
53
broad histone mark
36
narrow histone mark
32
chromatin remodeller
5
other context
5
other post-translational modification
Date released
315
November, 2017
175
August, 2017
87
November, 2018
58
October, 2018
48
December, 2017
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
6
April, 2018
6
September, 2017
2
July, 2018
1
March, 2019
Available data
2489
bam
2254
bigWig
1348
bed narrowPeak
1195
tsv
916
bigBed narrowPeak
804
fastq
272
bed broadPeak
258
tagAlign
235
bigBed broadPeak
208
bed bed3+
158
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
13
hic
12
bedpe bed3+
6
bed bed3
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
797
Homo sapiens
Biosample type
427
cell line
409
primary cell
377
tissue
141
in vitro differentiated cells
4
stem cell
Organ
450
liver
213
pancreas
60
blood
60
bodily fluid
43
adipose tissue
43
connective tissue
24
spleen
12
brain
2
musculature of body
Project
804
AMP
Genome assembly (visualization)
661
hg19
601
GRCh38
Lab
778
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
inconsistent control
Audit category:
39
missing controlled_by
Audit category:
32
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
BIOSAMPLE
ASSAY
804 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
RRBS
FAIRE-seq
Hi-C
cell line
HepG2
360
5
1
1
GM12878
60
tissue
islet of Langerhans
28
103
20
1
1
liver
67
1
2
1
body of pancreas
33
4
2
2
spleen
20
1
2
1
pancreas
16
2
1
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