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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
total RNA-seq
77
ChIP-seq
24
ATAC-seq
4
WGBS
3
DNase-seq
2
FAIRE-seq
Assay category
103
Transcription
77
DNA binding
29
DNA accessibility
4
DNA methylation
Target of assay
42
histone
42
histone modification
25
broad histone mark
18
control
17
narrow histone mark
17
transcription factor
8
RNA binding protein
Date released
127
August, 2017
35
October, 2018
24
May, 2022
7
November, 2018
6
April, 2018
6
September, 2017
5
October, 2017
2
July, 2018
1
March, 2019
Available data
429
bam
373
bigWig
275
tsv
213
fastq
123
bed narrowPeak
62
bigBed narrowPeak
27
bed bed3+
20
bed broadPeak
16
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
206
Homo sapiens
Biosample type
258
primary cell
213
tissue
Organ
213
pancreas
83
liver
43
adipose tissue
43
connective tissue
24
spleen
12
brain
2
musculature of body
Project
213
AMP
Genome assembly (visualization)
186
hg19
170
GRCh38
Lab
187
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
213 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
103
28
20
1
1
body of pancreas
33
4
2
2
pancreas
16
2
1
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