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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
408
ChIP-seq
5
total RNA-seq
1
Hi-C
1
WGBS
Assay category
408
DNA binding
5
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
337
transcription factor
82
recombinant protein
63
RNA binding protein
61
control
30
chromatin remodeller
5
histone
5
histone modification
3
narrow histone mark
2
broad histone mark
2
other context
2
other post-translational modification
Date released
303
November, 2017
61
November, 2018
28
December, 2018
23
January, 2019
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
415
Homo sapiens
Biosample type
415
cell line
397
primary cell
362
tissue
141
in vitro differentiated cells
4
stem cell
Organ
355
liver
60
blood
60
bodily fluid
Project
415
AMP
Genome assembly (visualization)
355
hg19
312
GRCh38
Lab
415
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
415 results
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ChIP-seq
total RNA-seq
Hi-C
WGBS
cell line
HepG2
348
5
1
1
GM12878
60
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