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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
36
single cell RNA-seq
27
snATAC-seq
11
ATAC-seq
8
WGBS
5
GRO-seq
4
RRBS
2
ChIP-seq
1
Hi-C
1
pCHi-C
Assay category
2
DNA binding
1
3D chromatin structure
Target of assay
1
broad histone mark
1
histone
1
histone modification
1
transcription factor
Date released
1
December, 2018
1
November, 2017
1
October, 2017
Available data
bam
1395
bigWig
1325
bed narrowPeak
858
fastq
801
bigBed narrowPeak
398
tagAlign
114
bed broadPeak
79
bigBed broadPeak
58
bed bed3+
23
hic
20
bedpe bed3+
5
hdf5
3
cool
3
tar
1
bedpe
1
tagAlign bed3+
Organism
3
Homo sapiens
Biosample type
2
cell line
1
tissue
Organ
2
liver
1
brain
Project
3
AMP
Lab
3
AMP-T2D consortium
Audit category:
1
missing controlled_by
files.file_type!
bam
BIOSAMPLE
ASSAY
3 results
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ChIP-seq
Hi-C
cell line
HepG2
1
1
tissue
brain
1
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