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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
snATAC-seq
21
ATAC-seq
Assay category
128
Transcription
48
DNA accessibility
12
DNA methylation
2
DNA binding
1
3D chromatin structure
Date released
27
February, 2021
10
February, 2023
7
August, 2020
3
September, 2020
1
October, 2017
Available data
492
bed narrowPeak
bam
350
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
48
Homo sapiens
Biosample type
37
primary cell
6
tissue
5
in vitro differentiated cells
Organ
11
pancreas
10
epithelium
5
connective tissue
4
bone element
4
skeleton
1
brain
Project
37
HPAP
11
AMP
Genome assembly (visualization)
11
GRCh38
11
hg19
Lab
37
Klaus Kaestner, Upenn
10
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
27
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
48 results
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snATAC-seq
ATAC-seq
primary cell
Langerhans cell
27
pancreatic alpha cell
7
pancreatic beta cell
3
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
islet of Langerhans
1
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in vitro differentiated cells
chondrocyte
5
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