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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
651
ChIP-seq
228
total RNA-seq
128
single cell RNA-seq
59
ATAC-seq
27
snATAC-seq
17
WGBS
4
RRBS
2
FAIRE-seq
1
DNase-seq
1
GRO-seq
1
Hi-C
Assay category
651
DNA binding
356
Transcription
89
DNA accessibility
21
DNA methylation
1
3D chromatin structure
Target of assay
372
transcription factor
146
control
128
histone modification
127
histone
82
recombinant protein
74
RNA binding protein
67
broad histone mark
60
narrow histone mark
28
chromatin remodeller
4
other context
4
other post-translational modification
Date released
260
November, 2017
213
August, 2017
79
November, 2018
76
February, 2023
73
September, 2018
60
October, 2018
51
December, 2017
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
35
December, 2018
30
January, 2019
24
May, 2022
13
October, 2017
11
September, 2017
7
August, 2020
3
August, 2018
3
June, 2018
1
January, 2018
Available data
3101
bam
2870
bigWig
1645
bed narrowPeak
1469
tsv
1217
fastq
1025
bigBed narrowPeak
358
tagAlign
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
1118
Homo sapiens
Biosample type
389
primary cell
369
cell line
357
tissue
in vitro differentiated cells
4
stem cell
Organ
461
pancreas
389
liver
234
epithelium
60
blood
60
bodily fluid
45
connective tissue
42
adipose tissue
23
spleen
10
brain
2
musculature of body
2
vasculature
1
blood vessel
Project
950
AMP
169
HPAP
Genome assembly (visualization)
793
hg19
752
GRCh38
1
hg18
Lab
926
AMP-T2D consortium
169
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
Audit category:
28
inconsistent control
27
audit script error
7
inconsistent ontology term
Audit category:
81
missing controlled_by
Audit category:
26
inconsistent control read length
9
inconsistent control run_type
1
inconsistent assembly
files.file_type!
bed broadPeak
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
1119 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
RRBS
FAIRE-seq
DNase-seq
GRO-seq
Hi-C
primary cell
pancreatic alpha cell
13
52
12
13
6
Langerhans cell
34
27
pancreatic beta cell
13
21
12
10
exocrine cell
39
pancreatic ductal cell
13
4
9
4
+ See 18 more…
cell line
HepG2
302
5
1
1
GM12878
60
tissue
islet of Langerhans
28
103
18
1
1
liver
67
1
1
body of pancreas
33
4
2
spleen
20
1
2
pancreas
10
2
1
+ See 8 more…
stem cell
hESC
3
1
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