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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
single cell RNA-seq
120
total RNA-seq
75
ChIP-seq
32
ATAC-seq
27
snATAC-seq
6
WGBS
1
RRBS
Assay category
248
Transcription
75
DNA binding
59
DNA accessibility
7
DNA methylation
Target of assay
59
histone
59
histone modification
32
narrow histone mark
27
broad histone mark
16
control
Date released
76
February, 2023
73
September, 2018
48
July, 2018
45
February, 2021
44
August, 2017
41
September, 2020
38
April, 2018
7
August, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
November, 2017
2
October, 2018
1
November, 2018
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
389
Homo sapiens
Biosample type
389
primary cell
369
cell line
357
tissue
140
in vitro differentiated cells
4
stem cell
Organ
258
pancreas
234
epithelium
3
brain
3
connective tissue
2
vasculature
1
blood vessel
Project
220
AMP
169
HPAP
Genome assembly (visualization)
211
GRCh38
206
hg19
Lab
220
AMP-T2D consortium
169
Klaus Kaestner, Upenn
Audit category:
27
audit script error
7
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
389 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
RRBS
primary cell
pancreatic alpha cell
12
52
13
13
6
Langerhans cell
34
27
pancreatic beta cell
12
21
13
10
exocrine cell
39
pancreatic ductal cell
9
4
13
4
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