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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
34
single cell RNA-seq
27
snATAC-seq
12
ATAC-seq
6
WGBS
Assay category
132
Transcription
39
DNA accessibility
6
DNA methylation
Date released
76
February, 2023
45
February, 2021
41
September, 2020
7
August, 2020
6
May, 2022
1
March, 2019
1
October, 2017
Available data
310
bigWig
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
177
Homo sapiens
Biosample type
169
primary cell
8
tissue
Organ
77
pancreas
69
epithelium
Project
169
HPAP
8
AMP
Genome assembly (visualization)
11
GRCh38
1
hg19
Lab
AMP-T2D consortium
169
Klaus Kaestner, Upenn
6
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
files.file_type!
hdf5
bed narrowPeak
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
177 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
primary cell
Langerhans cell
34
27
pancreatic alpha cell
42
7
6
exocrine cell
39
pancreatic beta cell
11
3
tissue
islet of Langerhans
6
2
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