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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
314
ChIP-seq
123
total RNA-seq
29
ATAC-seq
11
DNase-seq
11
WGBS
5
GRO-seq
3
RRBS
2
FAIRE-seq
2
Hi-C
1
pCHi-C
Assay category
314
DNA binding
123
Transcription
42
DNA accessibility
14
DNA methylation
2
3D chromatin structure
Target of assay
transcription factor
157
histone modification
156
histone
152
control
85
broad histone mark
84
RNA binding protein
82
recombinant protein
70
narrow histone mark
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
184
August, 2017
74
November, 2017
52
December, 2017
43
October, 2018
39
February, 2018
24
May, 2022
23
November, 2018
17
October, 2017
16
January, 2019
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2018
2
July, 2018
2
March, 2019
1
August, 2018
Available data
2308
bam
2070
bigWig
1330
tsv
1063
bed narrowPeak
538
bigBed narrowPeak
500
fastq
289
tagAlign
229
bed broadPeak
217
bed bed3+
192
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
494
Homo sapiens
Biosample type
primary cell
299
tissue
108
in vitro differentiated cells
90
cell line
4
stem cell
Organ
197
pancreas
138
liver
59
connective tissue
27
adipose tissue
24
embryo
18
spleen
17
epithelium
12
brain
9
blood
9
bodily fluid
2
musculature of body
Project
501
AMP
Genome assembly (visualization)
343
hg19
314
GRCh38
5
hg18
Lab
474
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
26
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
transcription factor
biosample_type!
primary cell
BIOSAMPLE
ASSAY
501 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
21
103
20
1
1
1
liver
30
2
1
1
body of pancreas
24
4
2
2
pancreas
15
2
1
spleen
14
1
1
2
+ See 7 more…
in vitro differentiated cells
adipocyte
31
1
pancreatic endoderm
15
4
1
hepatocyte
13
definitive endodermal cell
6
2
1
primitive gut cell
6
2
1
+ See 7 more…
cell line
HepG2
74
5
1
1
GM12878
9
stem cell
hESC
3
1
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