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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
single cell RNA-seq
120
total RNA-seq
94
ChIP-seq
32
ATAC-seq
27
snATAC-seq
6
Hi-C
6
WGBS
1
DNase-seq
1
RRBS
Assay category
248
Transcription
94
DNA binding
60
DNA accessibility
7
DNA methylation
6
3D chromatin structure
Target of assay
73
histone
73
histone modification
40
narrow histone mark
33
broad histone mark
16
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
76
February, 2023
73
September, 2018
58
August, 2017
48
July, 2018
45
February, 2021
41
September, 2020
38
April, 2018
9
November, 2017
7
August, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
1
October, 2019
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
415
Homo sapiens
Biosample type
429
cell line
415
primary cell
388
tissue
145
in vitro differentiated cells
4
stem cell
Organ
261
pancreas
243
epithelium
9
brain
8
vasculature
5
blood vessel
3
connective tissue
2
vein
Project
242
AMP
172
HPAP
1
ITG
Genome assembly (visualization)
231
hg19
230
GRCh38
Lab
242
AMP-T2D consortium
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
31
audit script error
7
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
415 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
Hi-C
WGBS
DNase-seq
RRBS
primary cell
pancreatic alpha cell
12
52
13
13
1
6
Langerhans cell
34
27
pancreatic beta cell
12
21
13
10
1
exocrine cell
39
pancreatic ductal cell
9
4
13
4
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