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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
34
single cell RNA-seq
30
ATAC-seq
27
snATAC-seq
7
Hi-C
6
WGBS
Assay category
57
DNA accessibility
34
Transcription
7
3D chromatin structure
6
DNA methylation
Date released
45
February, 2021
25
September, 2020
18
May, 2022
7
August, 2020
3
October, 2022
2
August, 2021
2
March, 2019
1
March, 2023
1
October, 2017
Available data
274
bed narrowPeak
212
bigWig
153
zippedFastqFolder
103
bam
97
fastq
84
tagAlign
64
xls
11
txt
7
hic
6
tsv
5
bedpe bed3+
3
bed bedgraph
3
cool
2
bed bed3+
2
bed broadPeak
1
bedpe
1
vcf
Organism
104
Homo sapiens
Biosample type
81
primary cell
22
tissue
1
cell line
Organ
40
pancreas
19
epithelium
1
kidney
1
liver
Project
80
HPAP
23
AMP
1
ITG
Genome assembly (visualization)
25
hg19
12
GRCh38
Lab
AMP-T2D consortium
80
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
30
audit script error
lab.title!
AMP-T2D consortium
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
104 results
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Clear Filters
single cell RNA-seq
ATAC-seq
snATAC-seq
Hi-C
WGBS
primary cell
Langerhans cell
34
27
pancreatic alpha cell
7
1
6
pancreatic beta cell
3
1
chondrocytes
1
pancreatic acinar cell
1
tissue
islet of Langerhans
20
1
kidney
1
cell line
HepG2
1
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