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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
147
total RNA-seq
42
single cell RNA-seq
33
ATAC-seq
27
snATAC-seq
7
Hi-C
6
WGBS
Assay category
189
Transcription
60
DNA accessibility
7
3D chromatin structure
6
DNA methylation
Date released
79
February, 2023
59
August, 2021
45
February, 2021
41
September, 2020
24
May, 2022
7
August, 2020
3
October, 2022
2
March, 2019
1
March, 2023
1
October, 2017
Available data
310
bigWig
274
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
262
Homo sapiens
Biosample type
173
primary cell
85
tissue
3
in vitro differentiated cells
1
cell line
Organ
99
pancreas
72
epithelium
58
kidney
1
liver
Project
172
HPAP
89
AMP
1
ITG
Genome assembly (visualization)
28
hg19
12
GRCh38
Lab
AMP-T2D consortium
172
Klaus Kaestner, Upenn
58
Katalin Susztak, Upenn
24
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
1
ITG
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
30
audit script error
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
262 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
Hi-C
WGBS
primary cell
Langerhans cell
34
27
pancreatic alpha cell
42
7
1
6
exocrine cell
39
pancreatic beta cell
11
3
1
chondrocytes
1
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tissue
kidney
49
8
1
islet of Langerhans
6
20
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
HepG2
1
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