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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
68
ChIP-seq
66
single cell RNA-seq
32
ATAC-seq
6
Hi-C
6
WGBS
Assay category
147
Transcription
68
DNA binding
32
DNA accessibility
6
3D chromatin structure
6
DNA methylation
Target of assay
49
histone
49
histone modification
26
narrow histone mark
23
broad histone mark
17
control
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
61
September, 2018
37
February, 2023
33
July, 2018
29
April, 2018
29
August, 2017
19
December, 2017
19
September, 2020
7
August, 2020
6
February, 2021
5
September, 2017
3
August, 2018
3
October, 2022
2
November, 2017
2
October, 2018
1
June, 2018
1
March, 2020
1
November, 2019
1
October, 2019
Available data
317
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
259
Homo sapiens
Biosample type
239
primary cell
19
in vitro differentiated cells
1
cell line
Organ
476
pancreas
406
liver
259
epithelium
99
connective tissue
60
blood
60
bodily fluid
43
adipose tissue
27
embryo
23
spleen
13
brain
5
vasculature
4
blood vessel
4
musculature of body
3
heart
2
vein
1
kidney
Project
187
AMP
72
HPAP
Genome assembly (visualization)
177
GRCh38
175
hg19
Lab
187
AMP-T2D consortium
72
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
259 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
Hi-C
WGBS
primary cell
pancreatic alpha cell
52
13
12
13
1
6
pancreatic beta cell
21
13
12
10
1
pancreatic ductal cell
4
13
9
4
pancreatic acinar cell
4
8
9
5
1
pancreatic delta cell
11
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in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
cell line
EndoC_BH1
1
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