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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
ChIP-seq
5
total RNA-seq
1
Hi-C
1
WGBS
Assay category
105
DNA binding
5
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
96
transcription factor
29
RNA binding protein
16
recombinant protein
15
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
November, 2017
61
November, 2018
28
December, 2018
23
January, 2019
Available data
268
bam
254
bigWig
155
bed narrowPeak
119
tsv
112
fastq
106
bigBed narrowPeak
8
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
hdf5
1
txt
1
vcf
Organism
112
Homo sapiens
Biosample type
400
primary cell
377
tissue
141
in vitro differentiated cells
112
cell line
4
stem cell
Organ
60
blood
60
bodily fluid
52
liver
Project
112
AMP
Genome assembly (visualization)
104
GRCh38
101
hg19
Lab
112
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2017
BIOSAMPLE
ASSAY
112 results
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ChIP-seq
total RNA-seq
Hi-C
WGBS
cell line
GM12878
60
HepG2
45
5
1
1
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